package runconfiguration;

import fitness.AmplyFitness;
import optimizers.commons.Parameter;
import optimizers.commons.RunConfig;

public class AmplyConfiguration extends RunConfig {

	
	private static final long serialVersionUID = 1L;

	public AmplyConfiguration() {
		template = new Parameter(TEMPLATE_OPTIMIZE_YES, 25, -60, 60,
				new double[0]);
		seqK = new Parameter(SEQK_OPTIMIZE_YES, 50, 3E-2 / 0.2, 2e1 / 0.2,
				new double[0]);
		inhK = new Parameter(INHK_OPTIMIZE_NO_7_6_RULE, 0, 0, 0, new double[0]);
		exoActivity = new Parameter(EXO_OPTIMIZE_YES, (double) 0.7, 0.01, 3.5,
				new double[0]);
		exoSimpleKm = new Parameter(EXO_OPTIMIZE_NO, (double) 300, 0, 0,
				new double[0]);
		exoInhibKm = new Parameter(EXO_OPTIMIZE_NO, (double) 135, 0, 0,
				new double[0]);
		polActivity = new Parameter(POL_OPTIMIZE_YES, (double) 17, 0.1, 15, new double[0]);
		polKm = new Parameter(EXO_OPTIMIZE_NO, (double) 0, 0, 0,
				new double[0]);
		polDoubleStrandKm = new Parameter(EXO_OPTIMIZE_NO, (double) 0, 0, 0,
				new double[0]);
		nickActivity = new Parameter(NICK_OPTIMIZE_YES, (double) 3, 0.1, 6, new double[0]);
		nickKm = new Parameter(EXO_OPTIMIZE_NO, (double) 0, 0, 0,
				new double[0]);
		seqC = new Parameter(SEQC_OPTIMIZE_NO, 0, 1, 20, new double[0]);
		evaluator = new AmplyFitness();
}
}